Search for: All records

Single cell data integration methods aim to integrate cells across data batches and modalities, and data integration tasks can be categorized into horizontal, vertical, diagonal, and mosaic integration, where mosaic integration is the most general and challenging case with few methods developed. We propose scMoMaT, a method that is able to integrate single cell multi-omics data under the mosaic integration scenario using matrix tri-factorization. During integration, scMoMaT is also able to uncover the cluster specific bio-markers across modalities. These multi-modal bio-markers are used to interpret and annotate the clusters to cell types. Moreover, scMoMaT can integrate cell batches with unequal cell type compositions. Applying scMoMaT to multiple real and simulated datasets demonstrated these features of scMoMaT and showed that scMoMaT has superior performance compared to existing methods. Specifically, we show that integrated cell embedding combined with learned bio-markers lead to cell type annotations of higher quality or resolution compared to their original annotations.

 

We report here the synthesis, characterization, and crystal structures of three perfluoropropylated dibenzo[ a , c ]phenazine constitutional isomers, in which the only difference among them was the positions of the perfluoropropyl substituents. The crystal structures of these perfluropropylated dibenzo[ a , c ]phenazine isomers indicated that the stereo-electronic effect of the perfluoropropyl group on the dibenzo[ a , c ]phenazine molecule plays a crucial role in determining the crystal-packing motif in the solid state. Our results from both X-ray crystallography and computational approaches revealed that the positions of the perfluoropropyl groups on the dibenzo[ a , c ]phenazine ring significantly affected the electrostatic potential distribution along the aromatic ring surface, resulting in drastic changes in the molecular packing in the solid state, from herringbone to lamellar crystal packing, among these three constitutional isomers. Simple topological consideration of the molecular packing in the solid state was coincidently cooperative with the changes in the electrostatic potential distributions, where localized partial positive and partial negative charges perhaps dominated the intermolecular interactions between the aromatic rings. Together, the perfluoropropylation on the dibenzo[ a , c ]phenazine ring provided us with a fortunate scenario, wherein the molecular topological structure and electrostatic potential worked together to facilitate the formation of the desired lamellar π–π stacked crystal packing. Meanwhile, electrochemistry, UV-visible absorption and emission spectra, and the computational chemistry results pointed out that there were only minor to moderate changes in the electronic properties of the molecules upon changing the position of the perfluoroalkylation on the dibenzo[ a , c ]phenazine core. While controlling the solid-state structure of aromatics by design still has a long way to go, we hope that our work will ignite a spark that can potentially spread into the field of the design of organic solid-state materials. 

Through diversity of composition, sequence, and interfacial structure, hybrid materials greatly expand the palette of materials available to access novel functionality. The NSF Division of Materials Research recently supported a workshop (October 17–18, 2019) aiming to (1) identify fundamental questions and potential solutions common to multiple disciplines within the hybrid materials community; (2) initiate interfield collaborations between hybrid materials researchers; and (3) raise awareness in the wider community about experimental toolsets, simulation capabilities, and shared facilities that can accelerate this research. This article reports on the outcomes of the workshop as a basis for cross-community discussion. The interdisciplinary challenges and opportunities are presented, and followed with a discussion of current areas of progress in subdisciplines including hybrid synthesis, functional surfaces, and functional interfaces. 

Materials with high thermal conductivity (κ) are of technological importance and fundamental interest. We grew cubic boron nitride (cBN) crystals with controlled abundance of boron isotopes and measured κ greater than 1600 watts per meter-kelvin at room temperature in samples with enriched¹⁰B or¹¹B. In comparison, we found that the isotope enhancement of κ is considerably lower for boron phosphide and boron arsenide as the identical isotopic mass disorder becomes increasingly invisible to phonons. The ultrahigh κ in conjunction with its wide bandgap (6.2 electron volts) makes cBN a promising material for microelectronics thermal management, high-power electronics, and optoelectronics applications.